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simulation 25

Magnetotaxis

Magnetotactic bacteria · inclination navigation · the hemisphere paradox

Magnetotactic bacteria carry chains of magnetite crystals that align their bodies with Earth's magnetic field. When Richard Blakemore discovered them in 1975, he named the behavior for what he observed: the bacteria swim in a magnetic direction. North-seeking populations swim north. South-seeking populations swim south.

This description is accurate and misleading. The bacteria are not navigating toward a cardinal direction — they are using the field's inclination angle (the degree to which it tilts below horizontal) as a proxy for gravitational down. In both hemispheres, "align with field, swim toward the pole-end" points the bacteria toward the sediment where oxygen gradients are favorable. The hemisphere paradox makes this visible: north-seeking and south-seeking bacteria do opposite things magnetically but the same thing functionally.

Switch hemispheres to see the paradox. Then transplant a population across the equator to see what happens when the mechanism is correct but the context is wrong.

· ·
bacteria (normal)
bacteria (transplanted)
magnetic field lines
sediment layer
current state
Northern hemisphere
field inclination: −63°
bacteria type: north-seeking

What the simulation shows: in either hemisphere, the native population reaches the sediment. The mechanism (align with field, swim toward the steeper-inclination end) is identical. The result (descend toward sediment) is identical. Only the cardinal direction label — north-seeking, south-seeking — differs.

What it hides: the bacteria don't experience "hemisphere" as a category. There is no conditional logic. The mechanism runs the same way everywhere; the hemisphere is a property of the environment, not a parameter the cell reads. The transplant failure is not a bug in the bacterium — it is the same correct mechanism running on a different field geometry.

The naming problem: "magnetotaxis" describes the mechanism — field alignment — before the function — aerotaxis with a geometric shortcut — was understood. From inside a single hemisphere, both descriptions are consistent with the data. The hemisphere experiment is the natural test that separates them.